Nanopore sequence read simulator

Identification of differential RNA modifications from nanopore direct RNA sequencing

Training models for basecalling Oxford Nanopore reads

Detecting methylation using signal-level features from Nanopore sequencing reads

Tools and software library developed by the ONT Applications group

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.

NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

GUI for inspecting POD5 files

A de novo modification detection tool that targets current features based on 004kit for prokaryotes

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

rMETL - realignment-based Mobile Element insertion detection Tool for Long read

"nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.

Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.

ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data

SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.

Transcriptome long-read orientation with Deep Learning

Graph Convolution based model for de novo identification of nucleotide modifications

rMETL - realignment-based Mobile Element insertion detection Tool for Long read