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@WGLab

Wang Genomics Lab

We develop software tools for genome analysis

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  1. doc-ANNOVAR doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    240 380

  2. InterVar InterVar Public

    A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline

    Python 191 93

  3. dragonstar2019 dragonstar2019 Public

    135 95

  4. NanoCaller NanoCaller Public

    Variant calling tool for long-read sequencing data

    Python 105 8

  5. DeepMod DeepMod Public

    DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

    Python 101 35

  6. PennCNV PennCNV Public

    Copy number vaiation detection from SNP arrays

    C 91 56

Repositories

Showing 10 of 84 repositories
  • ContextSV Public

    An alignment-based, generalized structural variant caller for long-read sequencing/mapping data

    WGLab/ContextSV’s past year of commit activity
    C++ 2 MIT 0 5 0 Updated Mar 20, 2025
  • NanoCaller Public

    Variant calling tool for long-read sequencing data

    WGLab/NanoCaller’s past year of commit activity
    Python 105 MIT 8 32 0 Updated Mar 19, 2025
  • PhenoGPT Public
    WGLab/PhenoGPT’s past year of commit activity
    Jupyter Notebook 21 MIT 6 3 0 Updated Mar 15, 2025
  • InFuse Public

    Software for detecting gene fusions and exon-skippings from long read sequencing

    WGLab/InFuse’s past year of commit activity
    Python 0 0 0 0 Updated Mar 12, 2025
  • CoT-RAG-LLM-Gene-Prioritization-Disease-Diagnosis Public
    WGLab/CoT-RAG-LLM-Gene-Prioritization-Disease-Diagnosis’s past year of commit activity
    2 MIT 0 0 0 Updated Mar 11, 2025
  • DeepMod2 Public

    DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

    WGLab/DeepMod2’s past year of commit activity
    Jupyter Notebook 45 MIT 2 14 0 Updated Mar 5, 2025
  • doc-ANNOVAR Public

    Documentation for the ANNOVAR software

    WGLab/doc-ANNOVAR’s past year of commit activity
    240 380 130 0 Updated Mar 3, 2025
  • RankVar Public
    WGLab/RankVar’s past year of commit activity
    Python 0 0 0 0 Updated Feb 26, 2025
  • CancerVar Public

    Clinical interpretation of somatic mutations in cancer

    WGLab/CancerVar’s past year of commit activity
    Python 44 13 19 0 Updated Feb 20, 2025
  • LinkedSV Public
    WGLab/LinkedSV’s past year of commit activity
    C 20 MIT 9 15 0 Updated Feb 18, 2025
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