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Pull requests: nf-core/modules

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Pull requests list

Update sourmash/compare: Name output by prefix and update conda/docker Ready for Review
#7808 opened Mar 15, 2025 by zachary-foster Loading…
New module: seqkit/head Ready for Review
#7807 opened Mar 14, 2025 by zachary-foster Loading…
New module: khmer/trimlowabund Ready for Review
#7806 opened Mar 14, 2025 by zachary-foster Loading…
Update graphtyper/vcfconcatenate: Add batching to avoid long command line error Ready for Review
#7805 opened Mar 14, 2025 by zachary-foster Loading…
Update graphtyper/genotype to allow for compressed reference
#7804 opened Mar 14, 2025 by zachary-foster • Draft
Add bedtools/shuffle module
#7803 opened Mar 14, 2025 by itrujnara Loading…
11 of 13 tasks
1
1
Clean up hifiasm module + add bin file input
#7802 opened Mar 14, 2025 by prototaxites Loading…
4 of 17 tasks
5
Swap bamtools/split to nf-test Ready for Review
#7800 opened Mar 14, 2025 by SPPearce Loading…
1
chore(deps): update dependency python to 3.13
#7796 opened Mar 14, 2025 by renovate bot Loading…
2 tasks
1
Update bwa/index: Name bwa/index output path relative to input
#7793 opened Mar 13, 2025 by zachary-foster • Draft
New module: busco/download Ready for Review
#7788 opened Mar 12, 2025 by zachary-foster Loading…
Add extra_args to modules meta-schema.json
#7783 opened Mar 12, 2025 by mirpedrol Loading…
2
basicpy nf-test
#7772 opened Mar 11, 2025 by kbestak Loading…
2 of 17 tasks
1
22
add nf-test and stub to svtk/standardize
#7768 opened Mar 10, 2025 by kubranarci Loading…
17 tasks
1
Clair3
#7765 opened Mar 10, 2025 by robert-a-forsyth Loading…
14 of 17 tasks
25
Add dream module
#7750 opened Mar 6, 2025 by nschcolnicov Loading…
17 tasks
1
10
ci: Try running on arm
#7747 opened Mar 5, 2025 by edmundmiller • Draft
@edmundmiller
3
[DO NOT MERGE] Test gpu runners
#7521 opened Feb 27, 2025 by mashehu • Draft
2
bioformats2raw module
#7518 opened Feb 26, 2025 by CaroAMN Loading…
8 of 9 tasks
1
7
new module: FASTQDL
#7506 opened Feb 20, 2025 by camlloyd Loading…
11 of 17 tasks
1
21
gatk4/markduplicates - pipe uncompressed output to speed up CRAM writing
#7497 opened Feb 18, 2025 by pontushojer • Draft
11 of 17 tasks
4
simplify assertion for stable files in a folder
#7462 opened Feb 10, 2025 by maxulysse • Draft
17 tasks
7
Rattle cluster awaiting-changes will be closed after 30 days
#7447 opened Feb 6, 2025 by chriswyatt1 Loading…
3
New samtools/bgzip module to produce BGZF-compressed files.
#7433 opened Feb 5, 2025 by charles-plessy • Draft
17 tasks done
1
5
Add db to output meta object for diamond/blastp
#7403 opened Jan 30, 2025 by erikrikarddaniel Loading…
2 of 17 tasks
7
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