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30 Open 322 Closed
30 Open 322 Closed
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Issues list

Error with MetaspotsByGroups
#362 opened Apr 1, 2025 by Jianyangdu1111
1
Question about optimal assay choice for hdWGCNA after SCT+CCA integration in Seurat v5 question Further information is requested
#361 opened Mar 28, 2025 by petemeng
3
the change of MEs is not consistent with 25 hub gene scores question Further information is requested
#360 opened Mar 27, 2025 by wangBiojin
1
Question about Seurat V5 update question Further information is requested
#357 opened Mar 11, 2025 by GloriaLiu28
4
'wgcna_modules' slot of Seurat object has no rows question Further information is requested
#341 opened Dec 4, 2024 by dougbarrows
2
Question about [my question]Error in !CheckWGCNAName(seurat_obj, wgcna_name) : invalid argument type question Further information is requested
#334 opened Nov 15, 2024 by RGT183
5
Question about multiple spatial samples question Further information is requested
#333 opened Nov 14, 2024 by atrostleSW
4
Error in ConstructPseudobulk (argument is not a matrix) when I don't specify label_col
#327 opened Oct 30, 2024 by ddressman91
2
Question about the possibility of using external metacell asssignment question Further information is requested
#310 opened Sep 10, 2024 by pmandros
2
no applicable method for 'JoinLayers' applied to an object of class "c('Assay', 'KeyMixin') question Further information is requested
#296 opened Jul 19, 2024 by DLY-2021
4
MetacellsByGroups -> "Error in apply(cell_sample, 1, function(x) { : dim(X) must have a positive length" question Further information is requested
#290 opened Jul 9, 2024 by MJD-BlanckGroup
5
Seeking parameter suggestions for hdwgcna question Further information is requested
#285 opened Jun 26, 2024 by xjyenjoy81
2
ConstructMetaspots not compatible with Seurat's VisiumV2 class
#278 opened Jun 12, 2024 by ppm1337
6
Error when running "ModuleEigengenes()" with a seurat.v5 object
#271 opened May 30, 2024 by Zweig-Wong
5
Tweaking the number of modules question Further information is requested
#252 opened Apr 4, 2024 by Thapeachydude
2
Error with MetaspotsByGroups and ConstructMetaspots
#250 opened Mar 29, 2024 by liuxiawei
4
Conda Skeleton for Workflow Integration enhancement New feature or request
#229 opened Feb 29, 2024 by shahrozeabbas
1
ModuleFeaturePlot - add split.by option enhancement New feature or request
#227 opened Feb 26, 2024 by ashleshagogate
1
Question about exporting the networks to Metascape enhancement New feature or request question Further information is requested
#223 opened Feb 19, 2024 by DelongZHOU
4
MetaspotsByGroups : Error in as.Graph()
#217 opened Jan 28, 2024 by Prakrithi-P
6
Question about module preservation / reproducibility when creating the modules enhancement New feature or request question Further information is requested
#195 opened Dec 15, 2023 by DelongZHOU
1
Question about color of modules in volcano plots question Further information is requested
#194 opened Dec 13, 2023 by DelongZHOU
6
Enrichr filtering & background
#193 opened Dec 10, 2023 by DelongZHOU
4
Old links to description of statistics for module preservation question Further information is requested
#185 opened Dec 4, 2023 by Dimmiso
6
ConstructNetwork temp .rda file location
#182 opened Nov 30, 2023 by DelongZHOU
9
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