feat: TotalANVI model updated

[ori-kron-wis]

No description provided.

[codecov]

Codecov Report

Attention: Patch coverage is 71.61290% with 132 lines in your changes missing coverage. Please review.

Project coverage is 79.92%. Comparing base (d0abcdc) to head (26504aa).

Files with missing lines	Patch %	Lines
src/scvi/train/_trainingplans.py	53.00%	47 Missing ⚠️
src/scvi/external/totalanvi/_model.py	76.10%	27 Missing ⚠️
src/scvi/external/totalanvi/_module.py	82.20%	21 Missing ⚠️
src/scvi/model/_totalvi.py	70.27%	11 Missing ⚠️
src/scvi/module/_totalvae.py	78.43%	11 Missing ⚠️
src/scvi/module/base/_base_module.py	46.15%	7 Missing ⚠️
src/scvi/model/_utils.py	37.50%	5 Missing ⚠️
src/scvi/autotune/_experiment.py	0.00%	1 Missing ⚠️
src/scvi/module/_scanvae.py	75.00%	1 Missing ⚠️
src/scvi/module/_vae.py	75.00%	1 Missing ⚠️

❗ There is a different number of reports uploaded between BASE (d0abcdc) and HEAD (26504aa). Click for more details.

HEAD has 9 uploads less than BASE

Flag	BASE (d0abcdc)	HEAD (26504aa)
	12	3

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #3259      +/-   ##
==========================================
- Coverage   86.69%   79.92%   -6.77%     
==========================================
  Files         193      196       +3     
  Lines       17115    17543     +428     
==========================================
- Hits        14838    14022     -816     
- Misses       2277     3521    +1244     

Files with missing lines	Coverage Δ
src/scvi/external/__init__.py	100.00% <100.00%> (ø)
src/scvi/external/totalanvi/__init__.py	100.00% <100.00%> (ø)
src/scvi/model/base/_rnamixin.py	94.55% <ø> (ø)
src/scvi/model/base/_training_mixin.py	90.77% <100.00%> (+0.98%)	⬆️
src/scvi/train/__init__.py	100.00% <ø> (ø)
src/scvi/autotune/_experiment.py	0.00% <0.00%> (ø)
src/scvi/module/_scanvae.py	85.71% <75.00%> (-0.71%)	⬇️
src/scvi/module/_vae.py	94.61% <75.00%> (-0.31%)	⬇️
src/scvi/model/_utils.py	84.81% <37.50%> (-2.69%)	⬇️
src/scvi/module/base/_base_module.py	88.23% <46.15%> (-2.08%)	⬇️
... and 5 more

... and 26 files with indirect coverage changes

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[ori-kron-wis]

Also added the scib-metrics optimization support for this model in this branch