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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 496 242

  2. distributions distributions Public

    Makefile 1 5

  3. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 24

  4. docs docs Public

    Python 21 58

Repositories

Showing 10 of 78 repositories
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 0 0 3 2 Updated Mar 18, 2025
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 1 2 0 Updated Mar 18, 2025
  • cancer-microbiome-intervention-tutorial Public

    JupyterBook for QIIME 2 FAES January 2022 workshop

    qiime2/cancer-microbiome-intervention-tutorial’s past year of commit activity
    Jupyter Notebook 11 14 1 1 Updated Mar 18, 2025
  • data302 Public
    qiime2/data302’s past year of commit activity
    Python 0 BSD-3-Clause 10 1 0 Updated Mar 18, 2025
  • galaxy-tools Public

    Official QIIME 2 tools for Galaxy

    qiime2/galaxy-tools’s past year of commit activity
    Python 1 BSD-3-Clause 5 9 5 Updated Mar 17, 2025
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 1 BSD-3-Clause 5 4 0 Updated Mar 17, 2025
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 1 3 2 Updated Mar 17, 2025
  • cutlery Public archive

    Single silverware drawer for all forked github actions used in the QIIME 2 ecosystem

    qiime2/cutlery’s past year of commit activity
    0 0 0 0 Updated Mar 17, 2025
  • q2cli Public

    Command line interface for QIIME 2

    qiime2/q2cli’s past year of commit activity
    Python 19 BSD-3-Clause 24 14 2 Updated Mar 13, 2025
  • q2galaxy Public

    Generate Galaxy tool descriptions automatically from QIIME 2 actions.

    qiime2/q2galaxy’s past year of commit activity
    Python 19 BSD-3-Clause 17 10 1 Updated Mar 13, 2025

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