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    52 repositories

    • DIMOS

      Public
      Python
      •
      Other
      •1•7•0•0•Updated Mar 27, 2025Mar 27, 2025

    • illyrian

      Public
      Python
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      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Mar 7, 2025Mar 7, 2025

    • GUMIBAIR

      Public
      public repository for the GUtMIcrobiome BiAs Informed pRedictor (GUMIBAIR)
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Feb 16, 2025Feb 16, 2025

    • Adaptive-Message-Passing

      Public
      Official Repository of Adaptive Message Passing
      Python
      •
      Other
      •2•16•0•0•Updated Feb 14, 2025Feb 14, 2025

    • sensitivity-consistency-LLM

      Public
      Jupyter Notebook
      •
      Other
      •0•2•0•0•Updated Jan 24, 2025Jan 24, 2025

    • alebrew

      Public
      Official repository for the paper "Uncertainty-biased molecular dynamics for learning uniformly accurate interatomic potentials".
      Python
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      Other
      •3•16•0•0•Updated Oct 29, 2024Oct 29, 2024

    • ictp

      Public
      Official repository for the paper "Higher-Rank Irreducible Cartesian Tensors for Equivariant Message Passing".
      Python
      •
      Other
      •1•8•0•0•Updated Oct 29, 2024Oct 29, 2024

    • recurrency_baseline_tkg

      Public
      A Baseline for Temporal Knowledge Graph Forecasting based on Recurrency of facts
      Python
      •
      Other
      •1•9•0•1•Updated Oct 14, 2024Oct 14, 2024

    • agentquest

      Public
      Python
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      Other
      •3•25•0•0•Updated Oct 4, 2024Oct 4, 2024

    • CAPE-ML4Sci

      Public
      Python
      •2•13•1•0•Updated Aug 22, 2024Aug 22, 2024

    • gradpath

      Public
      Python
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      Other
      •0•1•0•0•Updated Jul 25, 2024Jul 25, 2024

    • glomicave

      Public
      WP2 source code of the GLOMICAVE project
      Java
      •0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • fact-linking

      Public
      Codebase for "Linking Surface Facts to Large-Scale Knowledge Graphs" (EMNLP 2023)
      Python
      •
      Other
      •1•11•0•0•Updated May 8, 2024May 8, 2024

    • neoagdt

      Public
      Optimizing personalized neoantigen vaccines by simulating cancer cells
      Jupyter Notebook
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      Other
      •0•3•0•0•Updated Apr 19, 2024Apr 19, 2024

    • TKG-Forecasting-Evaluation

      Public
      Evaluation of Methods for Temporal Knowledge Graph Forecasting
      Python
      •5•34•1•0•Updated Jan 26, 2024Jan 26, 2024

    • TRKG-Miner

      Public
      Temporally Relaxed Knowledge Graph Miner for Link Forecasting
      Jupyter Notebook
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      Apache License 2.0
      •2•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • graph-sum-product-networks

      Public
      Official Repository of ICLR 2024 paper "Tractable Probabilistic Graph Representation Learning with Graph-Induced Sum-Product Networks"
      Python
      •
      Other
      •0•7•0•0•Updated Jan 18, 2024Jan 18, 2024

    • class_distributions_graphs_tabular_data

      Public
      Official Repository of NeurIPS 2023 paper "On Class Distributions Induced by Nearest Neighbor Graphs for Node Classification of Tabular Data"
      Jupyter Notebook
      •0•2•0•0•Updated Nov 24, 2023Nov 24, 2023

    • CloneBuster

      Public
      C++
      •0•1•0•0•Updated Nov 15, 2023Nov 15, 2023

    • OpenIE_LFP

      Public
      Source code for MRL 2023 paper "Improving Cross-Lingual Transfer for Open Information Extraction with Linguistic Feature Projection"
      Python
      •0•3•0•0•Updated Oct 12, 2023Oct 12, 2023

    • tc-hard

      Public
      Experiments for "On TCR Binding Predictors Failing to Generalize to Unseen Peptides", Grazioli et al., Frontiers in Immunology 2022
      bioinformaticsimmunologytcrepitopesdeep-learning
      Jupyter Notebook
      •
      Other
      •2•7•1•0•Updated Aug 15, 2023Aug 15, 2023

    • tungl

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Aug 4, 2023Aug 4, 2023

    • peptide-distance-analysis

      Public
      This repository contains the codebase to reproduce the results presented in the paper "Assessing the Generalization Capabilities of TCR Binding Predictors via Peptide Distance Analysis" by Castorina et al.
      Python
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      Other
      •0•3•0•0•Updated Jun 30, 2023Jun 30, 2023

    • hidden_markov_model_temporal_graphs

      Public
      Official Repository of the Hidden Markov Model for Temporal Graphs (HMM4G)
      Python
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      Other
      •0•6•0•0•Updated Jun 18, 2023Jun 18, 2023

    • mobility-toolkit

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •3•3•3•2•Updated Jun 16, 2023Jun 16, 2023

    • CEN

      Public
      This is the official code release of the following paper: Zixuan Li, Saiping Guan, Xiaolong Jin, Weihua Peng, Yajuan Lyu , Yong Zhu, Long Bai, Wei Li, Jiafeng Guo, Xueqi Cheng . Complex Evolutional Pattern Learning for Temporal Knowledge Graph Reasoning. ACL 2022.
      Python
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      Apache License 2.0
      •5•1•0•0•Updated Jun 12, 2023Jun 12, 2023

    • VersaMatch

      Public
      VersaMatch: Ontology Matching with Weak Supervision
      Python
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      Other
      •1•7•0•0•Updated Feb 15, 2023Feb 15, 2023

    • DNA-Inception

      Public
      Python
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      Other
      •0•2•0•0•Updated Jan 26, 2023Jan 26, 2023

    • vibtcr

      Public
      Code for "Attentive Variational Information Bottleneck for TCR-peptide Interaction Prediction", Grazioli et al., Bioinformatics 2022
      bioinformaticsattentiontcrinformation-bottleneckbinding-prediction
      Jupyter Notebook
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      Other
      •1•23•2•0•Updated Jan 10, 2023Jan 10, 2023

    • keras-merge

      Public
      Python
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      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated Nov 23, 2022Nov 23, 2022