Repositories list

• matam

  Public
  Mapping-Assisted Targeted-Assembly for Metagenomics

  bioinformaticsassemblymetagenomics+ 1rrna

  Python

  •

  GNU Affero General Public License v3.0

  •11•20•44•0•Updated Mar 28, 2025Mar 28, 2025

• Porechop_ABI

  Public
  Adapter trimmer for Oxford Nanopore reads using ab initio method

  C++

  •

  GNU General Public License v3.0

  •131•40•6•0•Updated Nov 21, 2024Nov 21, 2024

• iedera

  Public
  subset and spaced seed design tool

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated May 28, 2024May 28, 2024

• yass

  Public
  genomic alignment similarity search tool

  C

  •

  GNU General Public License v3.0

  •6•1•0•0•Updated May 28, 2024May 28, 2024

• ComponentSearch2

  Public
  C++

  •

  GNU Affero General Public License v3.0

  •1•0•0•0•Updated Mar 27, 2023Mar 27, 2023

• sortmerna

  Public
  SortMeRNA: next-generation sequence filtering and alignment tool

  C++

  •

  GNU General Public License v3.0

  •68•0•0•0•Updated Apr 2, 2020Apr 2, 2020

• DiNAMO

  Public
  Discriminative DNA IUPAC motif discovery tool

  C++

  •

  GNU Affero General Public License v3.0

  •1•5•4•0•Updated Jun 13, 2018Jun 13, 2018

• conda_recipes

  Public
  Shell

  •0•0•0•0•Updated Oct 12, 2017Oct 12, 2017

• aln2gfa2

  Public
  Python

  •0•0•0•0•Updated Aug 31, 2017Aug 31, 2017

• stage_ambre

  Public
  Python

  •0•0•0•0•Updated Aug 31, 2017Aug 31, 2017

• ComponentSearch3

  Public
  C++

  •

  GNU General Public License v3.0

  •1•2•0•0•Updated Jul 13, 2017Jul 13, 2017

• read2aln

  Public
  Python

  •0•0•0•0•Updated Jul 6, 2017Jul 6, 2017

• RNANR

  Public
  A software for determining secondary structures within RNA and their non-redundant sampling.

  C

  •2•0•0•0•Updated May 11, 2017May 11, 2017

• vidjil

  Public
  Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire

  JavaScript

  •7•0•0•0•Updated Jan 13, 2017Jan 13, 2017

• ComponentSearch

  Public
  ContigSearch

  Java

  •1•0•1•0•Updated Oct 10, 2016Oct 10, 2016

• Smiles2Monomers

  Public
  A tool to rely chemical structures to biological structures

  Java

  •

  GNU Affero General Public License v3.0

  •7•0•0•0•Updated May 17, 2016May 17, 2016