Skip to content
@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

Pinned Loading

  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 6

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 242 repositories
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 6 6 5 Updated Mar 20, 2025
  • neoantigenPrediction Public
    oicr-gsi/neoantigenPrediction’s past year of commit activity
    WDL 0 0 0 0 Updated Mar 20, 2025
  • ClinicalReportGenerator Public

    a workflow for generation of Djerba Clinical Reports (generally), for RUO clinical reports (specifically)

    oicr-gsi/ClinicalReportGenerator’s past year of commit activity
    0 0 0 0 Updated Mar 20, 2025
  • methylDackel Public
    oicr-gsi/methylDackel’s past year of commit activity
    WDL 0 0 0 1 Updated Mar 20, 2025
  • bwaMeth Public

    Workflow to run bwa-meth, the fast aligner for EM-seq/BS-Seq reads.

    oicr-gsi/bwaMeth’s past year of commit activity
    WDL 0 0 0 1 Updated Mar 20, 2025
  • variantMerging Public

    a workflow for combining variant calls from SNV analyses done with different callers

    oicr-gsi/variantMerging’s past year of commit activity
    Python 0 GPL-2.0 0 0 1 Updated Mar 20, 2025
  • vardict Public
    oicr-gsi/vardict’s past year of commit activity
    0 0 0 1 Updated Mar 20, 2025
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 8 MIT 4 0 2 Updated Mar 20, 2025
  • pipeline-timings Public

    code for creating plots for review of pipeline/workflow run timings

    oicr-gsi/pipeline-timings’s past year of commit activity
    Python 0 0 0 0 Updated Mar 19, 2025
  • mutect2Consensus Public

    The Mutect2Consensus workflow will process umiConsensus outputs for the tumour data through mutect2 in tumour only mode to call variants then use information from the matched normal to identify likely germline variants.

    oicr-gsi/mutect2Consensus’s past year of commit activity
    WDL 0 0 0 1 Updated Mar 19, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…