Release v2.1.0 - Egyptian Koshari - 2025-03-05 · nf-core/funcscan

v2.1.0 - Egyptian Koshari - [2025-03-05]

#421, #429, #433, #438, #441 Updated to nf-core template 3.0.2, 3.1.0, 3.1.1, 3.1.2, and 3.2.0. (by @jfy133 and @jasmezz)
#427 AMPcombi now can use multiple other databases for classifications. (by @Darcy220606)
#428 Added InterProScan annotation workflow to the pipeline. The results are coupled to AMPcombi final table. (by @Darcy220606)
#431 Updated AMPcombi, Macrel, all MMseqs2 modules, MultiQC, Pyrodigal, and seqkit, added --taxa_classification_mmseqs_compressed parameter. (by @jasmezz)
#441 Updated MultiQC. (by @jasmezz and @jfy133)
#440 Updated Bakta and introduced new parameter --annotation_bakta_hmms. (by @jasmezz)

#427 Fixed the AMP reference database issues reported by users, due to non-ASCII characters. (by @Darcy220606)
#430 Updated rgi/main module to fix incorrect variable name. (by @amizeranschi and @jasmezz)
#435 Fixed dependency errors within taxonomy merging scripts, updated the code and output for all three workflows. Bumped to version 0.1.1. (by @Darcy220606)
#437 Fixed file name error when supplying already preprocessed CARD database for ARG workflow. (by @jasmezz)
#446 Updated antiSMASH modules to fix apptainer execution. (by @jasmezz and @jfy133)
#448 Fixed taxonomy merge to work with output from GTDB/SILVA/KALAMARI. (by @Darcy220606)
#447 Added --annotation_pyrodigal_usespecialstopcharacter parameter to improve AMPlify screening. (by @jasmezz)
#454 Updated default CPU requirement of ampcombi2/parsetables. (by @jasmezz)