NOTE (25/1/2024)
In this fork I am implementing BiocNeighbors methods for KNN calculation, which run faster than the original covertree method, and offer a more flexible interface to several other exact (kmknn, Vptree) and approximate (hsnw, already implemented in the original destiny release, and annoy) methods. This fork also adds support for sparse matrices for KNN, including rank correlation distance, through matrixStats.
So far build and tests seem to go well, but some polishing can still be done. I will submit a PR in the near future.
An R package for diffusion maps, with additional features for large-scale and single cell data.
-- Bioconductor stable
-- Bioconductor devel
