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1. pseudo-it pseudo-it Public

   An approach that iteratively generates pseudoreferences, incorporating sample-specific variation and reducing mapping biases

   Python 2

2. bricesarver.github.io bricesarver.github.io Public

   Brice Sarver's personal page

   CSS

3. codemlMA codemlMA Public

   Model averaging of parameters estimated in codeml selection analyses.

   Python

4. map2two map2two Public archive

   Processing of BAM information from reads mapped to two pesudoreferences.

   Python

5. prior_simulation_study prior_simulation_study Public

   A series of scripts used to evaluate the impact of tree priors and molecular clocks on estimates of diversification rates.

   R