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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 68 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 46 9

  3. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 1 1

  4. readii readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 5

  5. orcestra-downloader orcestra-downloader Public

    Python 1

  6. handbook handbook Public

    Lab Handbook For BHKLab

    3

Repositories

Showing 10 of 190 repositories
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools’s past year of commit activity
    Python 46 MIT 9 27 10 Updated Apr 3, 2025
  • handbook Public

    Lab Handbook For BHKLab

    bhklab/handbook’s past year of commit activity
    3 0 38 (1 issue needs help) 4 Updated Apr 3, 2025
  • med-image_test-data Public
    bhklab/med-image_test-data’s past year of commit activity
    Python 2 0 0 0 Updated Apr 2, 2025
  • PredictioR Public
    bhklab/PredictioR’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Apr 2, 2025
  • SignatureSets Public

    Compendium of published molecular signatures

    bhklab/SignatureSets’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Apr 1, 2025
  • pdxe-to-csv Public
    bhklab/pdxe-to-csv’s past year of commit activity
    Python 0 0 0 0 Updated Mar 28, 2025
  • med-imagenet Public

    Med-ImageNet processing scripts via Med-ImageTools AutoPipeline

    bhklab/med-imagenet’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Mar 27, 2025
  • ispy-readii Public

    Running READII on the I-SPY cohort for radiogenomic analysis.

    bhklab/ispy-readii’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Mar 27, 2025
  • AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    bhklab/AnnotationGx’s past year of commit activity
    R 1 MIT 1 7 0 Updated Mar 27, 2025
  • Xeva Public

    XEnograft Visualization & Analysis

    bhklab/Xeva’s past year of commit activity
    R 11 5 5 0 Updated Mar 20, 2025
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