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27 Open 46 Closed
27 Open 46 Closed
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Issues list

modify diffbind to be compatible with atacseq
#137 opened Mar 19, 2025 by lpantano
@eberdan
Documentation DE and QC
#136 opened Mar 19, 2025 by lpantano
@Gammerdinger
How to make a Seurat object with BPcells-good for big objects
#128 opened Mar 4, 2025 by lpantano
@abartlett004
1
make a note in the scRNA for nuclear data, mitRNA and rRNA is not interpreted the same
#124 opened Feb 27, 2025 by lpantano
final folder
#122 opened Feb 27, 2025 by Gammerdinger
Use other platforms for test-data that are bigger
#118 opened Feb 21, 2025 by lpantano
@lpantano
add riboRatio metaddata column to scrna test data tiny.rds enhancement New feature or request
#112 opened Feb 13, 2025 by abartlett004
Add methods for scATAC documentation Improvements or additions to documentation
#92 opened Feb 3, 2025 by lpantano
metadata source for DE template bug Something isn't working
#58 opened Nov 14, 2024 by eberdan
@lpantano
3
DE for continuous variables enhancement New feature or request
#56 opened Nov 13, 2024 by eberdan
load metrics for non- mouse / human. bug Something isn't working
#55 opened Nov 12, 2024 by eberdan
1
evaluate using chipseq qc template for cutandrun output enhancement New feature or request
#51 opened Oct 11, 2024 by abartlett004
test and potentially make templates for cell type annotation
#50 opened Sep 23, 2024 by abartlett004
Options for GRN with single cell enhancement New feature or request
#49 opened Sep 9, 2024 by lpantano
DEseq report discussion documentation Improvements or additions to documentation enhancement New feature or request RNAseq
#45 opened Aug 22, 2024 by lpantano
Adapt chipseq report to cutandrun output
#43 opened Aug 7, 2024 by abartlett004
3
add checks for low count genes?
#35 opened Jun 24, 2024 by eberdan
make sanitize_datatable into package function
#29 opened May 31, 2024 by abartlett004
check samplesheet function to ensure files exist enhancement New feature or request RNAseq
#27 opened May 28, 2024 by abartlett004
Common repository for lists of protein coding genes
#18 opened May 8, 2024 by lpantano
Common repository (dropbox?) for annotations to add to DE lists
#17 opened May 8, 2024 by lpantano
similar projects question Further information is requested
#13 opened Apr 26, 2024 by lpantano
Interactive volcano plot with glXYPlot enhancement New feature or request RNAseq
#12 opened Apr 25, 2024 by upendrabhattarai
Enrichment analysis flexibility enhancement New feature or request RNAseq
#11 opened Apr 25, 2024 by lpantano
DE - coefficient vs contrasts enhancement New feature or request RNAseq
#8 opened Apr 25, 2024 by lpantano
ProTip! What’s not been updated in a month: updated:<2025-02-21.