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@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

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  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 165 33

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 86 28

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 106 30

  4. Hotspot Hotspot Public

    Python 101 15

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 4

  6. popV popV Public

    Python 72 14

Repositories

Showing 10 of 64 repositories
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Apr 2, 2025
  • treedata Public

    anndata with trees

    YosefLab/treedata’s past year of commit activity
    Python 3 BSD-3-Clause 3 0 0 Updated Apr 2, 2025
  • mrvi_archive Public

    Multi-resolution Variational Inference

    YosefLab/mrvi_archive’s past year of commit activity
    Python 22 BSD-3-Clause 8 2 1 Updated Mar 31, 2025
  • Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    YosefLab/Cassiopeia’s past year of commit activity
    Python 86 MIT 28 23 (3 issues need help) 7 Updated Mar 31, 2025
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics’s past year of commit activity
    Python 56 BSD-3-Clause 14 14 5 Updated Mar 30, 2025
  • velovi Public
    YosefLab/velovi’s past year of commit activity
    Python 39 BSD-3-Clause 7 8 2 Updated Mar 24, 2025
  • popV Public
    YosefLab/popV’s past year of commit activity
    Python 72 MIT 14 1 3 Updated Mar 24, 2025
  • YosefLab/yoseflab.github.io’s past year of commit activity
    JavaScript 3 MIT 9 0 0 Updated Mar 23, 2025
  • Hotspot Public
    YosefLab/Hotspot’s past year of commit activity
    Python 101 MIT 15 19 1 Updated Feb 26, 2025
  • CellRangerIDE Public
    YosefLab/CellRangerIDE’s past year of commit activity
    Python 0 0 0 0 Updated Feb 25, 2025

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