Human limb development cell atlas

This repository contains codes and data used for the human embryonic limb cell atlas.

Marker genes for cell populations(cell types/cell states)

Interactive data browsers on CZI cellxgene , on our working data portal or developmental atlas website

Raw sequences and raw data matrices can be found on BioStudies

• human limb scRNA-seq
• human Visium spatial transcriptomics
• mouse limb scRNA-seq

Other resources related to downstream analyses

• human limb cell type-specific regulons

VisiumStitcher

• notebook for image stitching with hard-coded positioning
• notebook for RNA stitching following image stitching

acknowledgments - We would like to thank Valentina Lorenzi for her feedback and contribution