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MunskyGroup

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  1. uqbio2022 uqbio2022 Public

    2nd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School

    16 5

  2. FISH_Processing FISH_Processing Public

    Repository to automatically process ​Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).

    Jupyter Notebook 15 3

  3. UQBio2023 UQBio2023 Public

    3rd Annual Undergraduate Quantitative Biology (UQ-bio) Summer School

    Python 13 2

  4. uqbio2024 uqbio2024 Public

    Repository of codes and notebooks used during the 2024 UQ-Bio Summer School.

    Jupyter Notebook 13 9

  5. uqbio2021 uqbio2021 Public

    This is the repository for the 2021 uq-bio Summer School

    Jupyter Notebook 12 6

  6. thompson_etal_plos_one_2019 thompson_etal_plos_one_2019 Public

    Jupyter Notebook 3 1

Repositories

Showing 10 of 37 repositories
  • SSIT Public

    Stochastic System Identification Toolkit (SSIT) to model, analyze and design single-cell experiments

    MATLAB 2 BSD-3-Clause 8 9 (2 issues need help) 1 Updated Mar 21, 2025
  • rsnaped Public

    A library to quantify and design single-molecule gene expression experiments.

    Jupyter Notebook 2 BSD-3-Clause 0 0 0 Updated Mar 11, 2025
  • rSNAPsim Public

    RNA Sequence to NAscent Protein simulator

    Jupyter Notebook 2 MIT 1 15 (2 issues need help) 1 Updated Feb 25, 2025
  • human_riboswitch_hits Public
    Python 1 MIT 0 0 0 Updated Feb 10, 2025
  • FISH_Processing Public

    Repository to automatically process ​Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).

    Jupyter Notebook 15 BSD-3-Clause 3 16 (1 issue needs help) 1 Updated Dec 16, 2024
  • human_riboswitch_hits_gallery Public
    Python 0 MIT 1 0 0 Updated Oct 29, 2024
  • pycro-manager-munsky Public

    A "severed" fork of Pycro-manager v0.23 patched for compatibility with latest versions of NumPy

    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Sep 29, 2024
  • UQbio2024_Team4 Public
    Jupyter Notebook 0 0 0 0 Updated Jun 20, 2024
  • UQbio2024_Team2 Public
    Jupyter Notebook 0 0 0 0 Updated Jun 18, 2024
  • UQbio2024_Team6 Public
    Jupyter Notebook 0 0 0 0 Updated Jun 18, 2024
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