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@LaborBerlin

Labor Berlin - Charité Vivantes GmbH

Clinical Plattform "Bioinformatics & Data Science"

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  1. varvis-download Public

    A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

    JavaScript 4

  2. score-assemblies Public

    Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

    Python 26 1

  3. ont-assembly-snake Public

    Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

    Python 25 3

Repositories

Showing 10 of 12 repositories
  • action-gh-release Public Forked from softprops/action-gh-release

    📦 :octocat: GitHub Action for creating GitHub Releases

    TypeScript 0 MIT 517 0 0 Updated Mar 21, 2025
  • chatgpt-mattermost-bot.fork Public Forked from yGuy/chatgpt-mattermost-bot

    A very simple implementation of a service for a mattermost bot that uses ChatGPT in the backend.

    TypeScript 3 MIT 55 0 0 Updated Feb 21, 2025
  • simple_baserow_api Public Forked from KuechlerO/simple_baserow_api

    A simple python wrapper for the baserow API

    Python 3 Unlicense 1 0 0 Updated Feb 20, 2025
  • varvis-download Public

    A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

    JavaScript 4 GPL-3.0 0 10 0 Updated Feb 19, 2025
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    JavaScript 2 GPL-3.0 618 1 (1 issue needs help) 0 Updated Feb 4, 2025
  • bedrock-claude-chat Public Forked from aws-samples/bedrock-claude-chat

    AWS-native chatbot using Bedrock + Claude (+Mistral)

    TypeScript 2 MIT-0 394 0 0 Updated Nov 28, 2024
  • LB-tbdb Public Forked from jodyphelan/tbdb

    Standard database for the TBProfiler tool

    Python 2 LGPL-3.0 18 0 0 Updated May 13, 2024
  • ont-assembly-snake Public

    Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

    Python 25 MIT 3 0 0 Updated Apr 23, 2024
  • score-assemblies Public

    Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

    Python 26 MIT 1 0 0 Updated Apr 5, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 2 MIT 3,430 0 0 Updated Apr 5, 2023
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