Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

question about definition in # contigs column in ouput produced in Chdb.tsv file #399

Open
alicia-hgim opened this issue Jun 27, 2024 · 0 comments

Comments

@alicia-hgim
Copy link

Hi, I am wondering about the meaning of the column '# contigs' in the produced file Chdb.tsv. I dont understand the definition in the wiki.
I am entering in CheckM a fasta file containing 188 contigs. But then, after running checkM, in the Chdb.tsv file, the colum '# contigs' is equal to 2676. Shouldnt be the same number as the original one? Or is checkM calculating again the number of contigs of the original fasta?

Thanks in advance.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant