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@Ecogenomics

Australian Centre for Ecogenomics

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  1. GTDBTk GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Python 506 84

  2. CheckM CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Python 362 74

  3. gtdb-species-clusters gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Python 20 3

  4. BamM BamM Public archive

    Metagenomics-focused BAM file manipulation

    C 16 7

  5. GTDBNCBI GTDBNCBI Public

    The GTDB provides the software infrastructure for working with a large collection of genomic resources. The major goal of this initiative is to provide a phylogenetically consistent taxonomy for ar…

    Python 9 2

  6. Mannotator Mannotator Public archive

    Microbial annotation pipeline - in progress

    Perl 4 5

Repositories

Showing 10 of 37 repositories
  • GTDBTk Public

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

    Python 506 GPL-3.0 84 23 0 Updated Mar 5, 2025
  • Vue 2 1 11 0 Updated Jan 30, 2025
  • gtdb-itol-decorate Public

    Creates iTOL files for tree decoration, given a set of GTDB genomes.

    Python 4 GPL-3.0 0 2 0 Updated Jan 17, 2025
  • gtdb-release-tk Public

    Toolkit for updating the GTDB to the next release and generating data files for the GTDB website.

    Python 1 GPL-3.0 1 0 0 Updated Dec 3, 2024
  • gtdb-species-clusters Public

    Toolkit for establishing, updating, and validating GTDB species clusters

    Python 20 3 0 0 Updated Nov 18, 2024
  • gtdb-migration-tk Public

    Toolkit for updating the GTDB to the next release and test data

    Python 1 0 1 0 Updated Oct 11, 2024
  • Python 3 GPL-3.0 0 0 0 Updated Sep 3, 2024
  • CheckM Public

    Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    Python 362 GPL-3.0 74 21 1 Updated Sep 3, 2024
  • XSLT 0 0 0 0 Updated Feb 23, 2024
  • gtdb_precurate Public

    Automatic pre-curation of GTDB trees.

    Python 0 GPL-3.0 0 0 0 Updated Dec 12, 2023