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Add support for generating mmseqs taxonomy reports #466

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amizeranschi opened this issue Mar 21, 2025 · 2 comments
Open

Add support for generating mmseqs taxonomy reports #466

amizeranschi opened this issue Mar 21, 2025 · 2 comments
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enhancement Improvement for existing functionality

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@amizeranschi
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Description of feature

Mmseqs has built-in support for generating some useful reports via the mmseqs taxonomyreport command. This is described in the official wiki:
https://github.com/soedinglab/mmseqs2/wiki#taxonomy-report-in-kraken-or-krona-style

It would be great to have this functionally enabled in nf-core/funcscan. It would require the creation of an additional nf-core module called MMSEQS_TAXONOMYREPORT.

@amizeranschi amizeranschi added the enhancement Improvement for existing functionality label Mar 21, 2025
@jfy133
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jfy133 commented Mar 23, 2025

What do you think @jasmezz @Darcy220606 ?

@Darcy220606
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Visualization is always a nice add on feature 💥 We already use createtsv and publish the output table for mmseqs taxonomy classification. So creating this module should not be an issue if this is requested. Could also be integrated in the GUI downstream...

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