Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add annotation tool : Pyrodigal #213

Closed
Darcy220606 opened this issue Feb 6, 2023 · 2 comments
Closed

Add annotation tool : Pyrodigal #213

Darcy220606 opened this issue Feb 6, 2023 · 2 comments
Assignees
@jasmezz
Labels
enhancement Improvement for existing functionality
Milestone
2.0 - Brazilian E...

Comments

@Darcy220606
Copy link
Contributor

Description of feature

Add an updated and well maintained version of prodigal called PYRODIGAL
@Darcy220606 Darcy220606 added the enhancement Improvement for existing functionality label Feb 6, 2023
@Darcy220606 Darcy220606 added this to the Second Release milestone Feb 6, 2023
@jasmezz
Copy link
Collaborator

jasmezz commented Mar 27, 2023

Awaiting @louperelo's module :)

Adding pyrodigal should be very easy since it produces the same output files as prodigal (GFF + FNA files).
Note: Unless prodigal, pyrodial cannot produce output GBK files, so these will not be able to be saved (prodigal saves GBK files, when save_annotations is activated).

@jasmezz jasmezz self-assigned this Mar 27, 2023
@jasmezz jasmezz moved this from Todo to In Progress in nf-core Hackathon March 2023 Mar 27, 2023
@jasmezz jasmezz moved this from In Progress to Todo in nf-core Hackathon March 2023 Mar 27, 2023
@jasmezz jasmezz moved this from Todo to In Progress in nf-core Hackathon March 2023 Mar 28, 2023
@jasmezz jasmezz mentioned this issue Mar 28, 2023
Merged
9 tasks
@jasmezz jasmezz moved this to In Progress in nf-core Hackathon March 2023 Mar 29, 2023
@jasmezz
Copy link
Collaborator

jasmezz commented Apr 4, 2023

Closed by #251

@jasmezz jasmezz closed this as completed Apr 4, 2023
@github-project-automation github-project-automation bot moved this from In Progress to Done in nf-core Hackathon March 2023 Apr 4, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@jasmezz jasmezz

Labels
enhancement Improvement for existing functionality
Projects
No open projects
nf-core Hackathon March 2023
Status: Done
Milestone
2.0 - Brazilian Escondidinho
Development

No branches or pull requests
3 participants
@jfy133 @jasmezz @Darcy220606