Mikado.dot

digraph G {
    graph [rankdir=TB, clusterrank="local"];
    subgraph cluster_G {

        graph [style="filled,rounded",fillcolor="#80808018", label=""];
        __init__ [label="__init__", style="filled", fillcolor="#ffffffb2", fontcolor="#000000", group="0"];
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        serializers__blast_serializer__utils [label="serializers.blast_serializer.utils", style="filled", fillcolor="#ffffffb2", fontcolor="#000000", group="72"];
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        subprograms__serialise [label="subprograms.serialise", style="filled", fillcolor="#ffffffb2", fontcolor="#000000", group="84"];
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        transcripts__reference_gene [label="transcripts.reference_gene", style="filled", fillcolor="#ffffffb2", fontcolor="#000000", group="94"];
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        transcripts__transcript_methods__retrieval [label="transcripts.transcript_methods.retrieval", style="filled", fillcolor="#ffffffb2", fontcolor="#000000", group="97"];
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        transcripts__transcriptcomputer [label="transcripts.transcriptcomputer", style="filled", fillcolor="#ffffffb2", fontcolor="#000000", group="100"];
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        utilities__file_type [label="utilities.file_type", style="filled", fillcolor="#ffffffb2", fontcolor="#000000", group="103"];
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        utilities__namespace [label="utilities.namespace", style="filled", fillcolor="#ffffffb2", fontcolor="#000000", group="105"];
        subgraph cluster__transcripts__clique_methods {

            graph [style="filled,rounded",fillcolor="#80808018", label="_transcripts.clique_methods"];
            _transcripts__clique_methods__define_graphX [label="define_graph\n(_transcripts/clique_methods.py:39)", style="filled", fillcolor="#ffa499b2", fontcolor="#000000", group="2"];
            _transcripts__clique_methods__find_cliques [label="find_cliques\n(_transcripts/clique_methods.py:77)", style="filled", fillcolor="#ffa499b2", fontcolor="#000000", group="2"];
            _transcripts__clique_methods__find_communities [label="find_communities\n(_transcripts/clique_methods.py:13)", style="filled", fillcolor="#ffa499b2", fontcolor="#000000", group="2"];
        }
        subgraph cluster__transcripts__scoring_configuration {

            graph [style="filled,rounded",fillcolor="#80808018", label="_transcripts.scoring_configuration"];
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            _transcripts__scoring_configuration__NumBoolEqualityFilter [label="NumBoolEqualityFilter\n(_transcripts/scoring_configuration.py:25)", style="filled", fillcolor="#ffaa99b2", fontcolor="#000000", group="3"];
            _transcripts__scoring_configuration__RangeFilter [label="RangeFilter\n(_transcripts/scoring_configuration.py:43)", style="filled", fillcolor="#ffaa99b2", fontcolor="#000000", group="3"];
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            _transcripts__scoring_configuration__ScoringFile [label="ScoringFile\n(_transcripts/scoring_configuration.py:182)", style="filled", fillcolor="#ffaa99b2", fontcolor="#000000", group="3"];
            _transcripts__scoring_configuration__SizeFilter [label="SizeFilter\n(_transcripts/scoring_configuration.py:16)", style="filled", fillcolor="#ffaa99b2", fontcolor="#000000", group="3"];
            _transcripts__scoring_configuration__TargetScore [label="TargetScore\n(_transcripts/scoring_configuration.py:82)", style="filled", fillcolor="#ffaa99b2", fontcolor="#000000", group="3"];
            subgraph cluster__transcripts__scoring_configuration__RangeFilter {

                graph [style="filled,rounded",fillcolor="#80808018", label="_transcripts.scoring_configuration.RangeFilter"];
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                subgraph cluster__transcripts__scoring_configuration__RangeFilter__Unique {

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                }
            }
            subgraph cluster__transcripts__scoring_configuration__Requirements {

                graph [style="filled,rounded",fillcolor="#80808018", label="_transcripts.scoring_configuration.Requirements"];
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                subgraph cluster__transcripts__scoring_configuration__Requirements__compiled {

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            }
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        subgraph cluster__transcripts__transcript_base {

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            subgraph cluster__transcripts__transcript_base__Metric {

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            }
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